Parcels/.github/workflows/upstream-dev-ci.yaml at main · Parcels-code/Parcels · GitHub

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name: CI Upstream
on:
  push:
    branches:
      - main
  pull_request:
    branches:
      - main
    types: [opened, reopened, synchronize, labeled]
  schedule:
    - cron: "0 0 * * 1,4" # At 00:00 UTC on Monday and Wednesday.
  workflow_dispatch: # allows you to trigger the workflow run manually

concurrency:
  group: ${{ github.workflow }}-${{ github.ref }}
  cancel-in-progress: true

permissions: {}

env:
  FORCE_COLOR: 3

jobs:
  detect-ci-trigger:
    name: detect upstream-dev ci trigger
    runs-on: ubuntu-slim
    if: |
      github.repository == 'Parcels-code/Parcels'
      && (github.event_name == 'push' || github.event_name == 'pull_request')
      && !contains(github.event.pull_request.labels.*.name, 'skip-ci')
    outputs:
      triggered: ${{ steps.detect-trigger.outputs.trigger-found }}
    steps:
      - uses: actions/checkout@3d3c42e5aac5ba805825da76410c181273ba90b1 # v7.0.1
        with:
          fetch-depth: 2
          persist-credentials: false
      - uses: xarray-contrib/ci-trigger@74ddc46fc6ca7509549ac7b660d7a185948c1e74 # v1.2
        id: detect-trigger
        with:
          keyword: "[test-upstream]"

  cache-pixi-lock:
    name: cache pixi.lock
    runs-on: ubuntu-latest
    needs: detect-ci-trigger
    if: |
      always()
      && github.repository == 'Parcels-code/Parcels'
      && (
        (github.event_name == 'schedule' || github.event_name == 'workflow_dispatch')
        || (
          github.event_name == 'pull_request'
          && (
            needs.detect-ci-trigger.outputs.triggered == 'true'
            || contains( github.event.pull_request.labels.*.name, 'run-upstream')
          )
        )
      )

    env:
      MANIFEST_PATH: ci/nightly/pixi.toml
      LOCK_PATH: ci/nightly/pixi.lock

    outputs:
      cache-key: ${{ steps.pixi-lock.outputs.cache-key }}
      pixi-version: ${{ steps.pixi-lock.outputs.pixi-version }}
    steps:
      - uses: actions/checkout@3d3c42e5aac5ba805825da76410c181273ba90b1 # v7.0.1
        with:
          persist-credentials: false
      - uses: xarray-contrib/pixi-lock/create-and-cache@1fab4c17af8243f6ca1321bc941cf2325f46c05d # v0.1.1
        id: pixi-lock
        with:
          manifest-path: ${{ env.MANIFEST_PATH }}
          hash-files: |
            ${{ env.MANIFEST_PATH }}
            pyproject.toml
      - uses: actions/upload-artifact@cf430e030ddbb5b0abf93d22962f4752f3646cd9 # v7.0.2
        with:
          name: pixi-lock
          path: ${{ env.LOCK_PATH }}

  upstream-dev:
    name: upstream-dev
    runs-on: ubuntu-latest
    needs: cache-pixi-lock
    if: |
      always() && needs.cache-pixi-lock.result == 'success'

    defaults:
      run:
        shell: bash -l {0}

    env:
      MANIFEST_PATH: ci/nightly/pixi.toml

    outputs:
      log-file: ${{ steps.determine-log-path.outputs.log-file }}

    steps:
      - uses: actions/checkout@3d3c42e5aac5ba805825da76410c181273ba90b1 # v7.0.1
        with:
          fetch-depth: 0 # Fetch all history for all branches and tags.
          persist-credentials: false
      - name: Determine log path
        id: determine-log-path
        run: |
          echo "log-file=output-upstream-dev-log.jsonl" >> $GITHUB_OUTPUT;
      - name: Restore cached pixi lockfile
        uses: xarray-contrib/pixi-lock/restore@1fab4c17af8243f6ca1321bc941cf2325f46c05d # v0.1.1
        with:
          manifest-path: ${{ env.MANIFEST_PATH }}
          cache-key: ${{ needs.cache-pixi-lock.outputs.cache-key }}
      - uses: prefix-dev/setup-pixi@f00437f565399d418b0acc85936d12c1fb668347 # v0.10.1
        with:
          pixi-version: ${{ needs.cache-pixi-lock.outputs.pixi-version }}
          cache: true
          manifest-path: ${{ env.MANIFEST_PATH }}
          cache-write: ${{ github.event_name == 'push' && github.ref_name == 'main' }}
      - name: Import parcels
        run: |
          pixi run --manifest-path "$MANIFEST_PATH" -- python -c 'import parcels'
      - name: Run Tests
        if: success()
        id: status
        env:
          LOG_PATH: ${{ steps.determine-log-path.outputs.log-file }}
        run: |
          pixi run \
            --manifest-path "$MANIFEST_PATH" \
            tests-nightly --timeout=120 -rf --report-log "$LOG_PATH"
      - uses: actions/upload-artifact@cf430e030ddbb5b0abf93d22962f4752f3646cd9 # v7.0.2
        if: failure()
        with:
          name: log file
          path: ${{ steps.determine-log-path.outputs.log-file }}

  create-issue:
    name: report failing upstream-dev runs
    needs: upstream-dev
    runs-on: ubuntu-slim
    if: |
      always()
      && needs.upstream-dev.result == 'failure'
      && github.event_name == 'schedule'
      && github.repository_owner == 'Parcels-code'

    permissions:
      issues: write # open or edit an issue for failed CI runs

    steps:
      - uses: actions/download-artifact@9000827ccba6bdab643e8b6fd33ac0654aef8333 # v8.0.2
        with:
          name: log file
          path: logs/
      - name: Generate and publish the report
        uses: scientific-python/issue-from-pytest-log-action@35b4e0a9e06f8e7e261778289cf4b968b722662d # v1.6.2
        with:
          log-path: logs/${{ needs.upstream-dev.outputs.log-file }}
          assignees: VeckoTheGecko,erikvansebille
          issue-label: automated