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@MIC-DKFZ

MIC-DKFZ

Division of Medical Image Computing, German Cancer Research Center (DKFZ)

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  1. nnUNet nnUNet Public

    Python 9k 2.5k

  2. batchgenerators batchgenerators Public

    A framework for data augmentation for 2D and 3D image classification and segmentation

    Jupyter Notebook 1.2k 233

  3. trixi trixi Public

    Manage your machine learning experiments with trixi - modular, reproducible, high fashion. An experiment infrastructure optimized for PyTorch, but flexible enough to work for your framework and you…

    Python 227 21

  4. TractSeg TractSeg Public

    Automatic White Matter Bundle Segmentation

    Python 270 82

  5. basic_unet_example basic_unet_example Public

    An example project of how to use a U-Net for segmentation on medical images with PyTorch.

    Python 153 43

  6. nnDetection nnDetection Public

    nnDetection is a self-configuring framework for 3D (volumetric) medical object detection which can be applied to new data sets without manual intervention. It includes guides for 12 data sets that …

    Python 662 123

Repositories

Showing 10 of 131 repositories
  • MultiTalent Public

    Implemention of the Paper "MultiTalent: A Multi-Dataset Approach to Medical Image Segmentation"

    MIC-DKFZ/MultiTalent's past year of commit activity
    Python 71 Apache-2.0 7 0 0 Updated Oct 23, 2026
  • nninteractive-agent Public

    nnInteractive as a tool for AI agents: say what to segment, the agent does the rest (Claude Code, Codex, any MCP client)

    MIC-DKFZ/nninteractive-agent's past year of commit activity
    Python 17 Apache-2.0 0 0 0 Updated Oct 23, 2026
  • nnInteractive Public

    nnInteractive is a framework for 3D interactive segmentation, supporting intuitive prompts like points, scribbles, bounding boxes, and lasso. Trained on 120+ diverse 3D datasets, it sets a new standard in accuracy, usability, and adaptability for clinical and research applications.

    MIC-DKFZ/nnInteractive's past year of commit activity
    Python 513 Apache-2.0 61 13 1 Updated Oct 22, 2026
  • MatchPoint Public

    MatchPoint is a translational image registration framework written in C++. It offers a standardized interface to utilize several registration algorithm resources (like ITK, plastimatch, elastix) easily in a host application.

    MIC-DKFZ/MatchPoint's past year of commit activity
    C++ 4 3 0 0 Updated Oct 22, 2026
  • nnUNet Public
    MIC-DKFZ/nnUNet's past year of commit activity
    Python 8,983 Apache-2.0 2,505 73 26 Updated Oct 22, 2026
  • MITK-Diffusion Public

    MITK Diffusion - Official part of the Medical Imaging Interaction Toolkit

    MIC-DKFZ/MITK-Diffusion's past year of commit activity
    C++ 107 14 5 0 Updated Oct 22, 2026
  • migration-free-authorization Public
    MIC-DKFZ/migration-free-authorization's past year of commit activity
    Python 0 AGPL-3.0 0 0 0 Updated Oct 19, 2026
  • batchgeneratorsv2 Public
    MIC-DKFZ/batchgeneratorsv2's past year of commit activity
    Python 33 Apache-2.0 19 0 4 Updated Oct 15, 2026
  • batchgenerators Public

    A framework for data augmentation for 2D and 3D image classification and segmentation

    MIC-DKFZ/batchgenerators's past year of commit activity
    Jupyter Notebook 1,175 Apache-2.0 233 40 19 Updated Oct 15, 2026
  • nnssl Public
    MIC-DKFZ/nnssl's past year of commit activity
    Python 232 CC-BY-SA-4.0 31 9 3 Updated Oct 15, 2026
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