Issues

• Implement type checking via mypy (or similar)

  RangamaniLabUCSD/smart#175 · Filter by author emmetfrancis opened on Jul 21, 2024

• NaN returned by solver for certain axisymmetric test cases

  RangamaniLabUCSD/smart#170 · Filter by author emmetfrancis opened on May 21, 2024

• Add package to conda-forge

  RangamaniLabUCSD/smart#66 · Filter by author finsberg opened on Mar 8, 2023

• Handle dynamic attributes

  wontfix
  RangamaniLabUCSD/smart#59 · Filter by author finsberg opened on Mar 2, 2023
  1

• Compute mesh intersection between surface and boundary of volume

  RangamaniLabUCSD/smart#40 · Filter by author justinlaughlin opened on Feb 4, 2022
  1

  

• Some dolfin c++ issues (fixing in forked dolfin repo)

  enhancement: non-critical
  RangamaniLabUCSD/smart#39 · Filter by author justinlaughlin opened on Feb 4, 2022
  1

  

• BoundingBoxTree() doesn't work in parallel on MeshView meshes

  bug
  RangamaniLabUCSD/smart#38 · Filter by author justinlaughlin opened on Feb 3, 2022
  2

  

• Compute mesh intersection of two volumes and a surface for volume-volume-surface type fluxes

  RangamaniLabUCSD/smart#37 · Filter by author justinlaughlin opened on Feb 3, 2022
  1

  

• method to compute Damkohler number for a given reactive flux

  RangamaniLabUCSD/smart#35 · Filter by author justinlaughlin opened on Jan 14, 2022
  

• Support Dirichlet boundary condition

  enhancement: non-critical
  RangamaniLabUCSD/smart#18 · Filter by author justinlaughlin opened on Dec 5, 2019

• Translator for SBML

  enhancement: non-critical
  RangamaniLabUCSD/smart#16 · Filter by author justinlaughlin opened on Nov 23, 2019

• Reaction network

  enhancement: non-critical
  RangamaniLabUCSD/smart#13 · Filter by author justinlaughlin opened on Nov 22, 2019
  1

  

• Flux balance

  enhancement: non-critical
  RangamaniLabUCSD/smart#12 · Filter by author justinlaughlin opened on Nov 6, 2019

• Allow for initializing system from hdf5

  enhancement: non-critical
  RangamaniLabUCSD/smart#10 · Filter by author justinlaughlin opened on Oct 31, 2019

• Class to track scalar variables

  enhancement: non-critical
  RangamaniLabUCSD/smart#6 · Filter by author justinlaughlin opened on Oct 29, 2019

• Export parameters, species, compartments, and reactions into LaTeX format

  enhancement: non-critical
  RangamaniLabUCSD/smart#4 · Filter by author justinlaughlin opened on Oct 28, 2019
  

• Ability to setup and solve as a well-mixed system

  enhancement: non-critical
  RangamaniLabUCSD/smart#3 · Filter by author justinlaughlin opened on Oct 28, 2019
  1