Flatiron Institute

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1. CaImAn CaImAn Public

   Computational toolbox for large scale Calcium Imaging Analysis, including movie handling, motion correction, source extraction, spike deconvolution and result visualization.

   Python 741 399

2. finufft finufft Public

   Non-uniform fast Fourier transform library of types 1,2,3 in dimensions 1,2,3 on the CPU or GPU

   C++ 451 113

3. DeepFRI DeepFRI Public

   Deep functional residue identification

   Python 354 90

4. CaImAn-MATLAB CaImAn-MATLAB Public

   Complete Matlab pipeline for large scale calcium imaging data analysis

   MATLAB 261 151

5. FMM3D FMM3D Public

   Flatiron Institute Fast Multipole Libraries --- This codebase is a set of libraries to compute N-body interactions governed by the Laplace and Helmholtz equations, to a specified precision, in thre…

   Fortran 165 57

6. NoRMCorre NoRMCorre Public

   Matlab routines for online non-rigid motion correction of calcium imaging data

   MATLAB 160 96