Note
Analyze methylation and transcriptomics data in phased genomes using sequence graphs
This GitHub repository is associated with the following pre-print article: Phased epigenomics and methylation inheritance in a historical Vitis vinifera hybrid
- BSSEQ_preprocessing
- BSSEQ_extract_methylation
- BSSEQ_split_context
- SRS_vs_LRS
- METHYLKIT_preprocessing
- METHYLKIT_single_genome_bias
- METHYLKIT_dma_optimization
- RNASEQ_genome_level
- RNASEQ_allelic_pairs
- PANGENOME_nextflow
- PANMETHYLOME
- PANTRANSCRIPTOME
- GENOMES_large_scale_aln
MIT License